The following drop-down menu allows for the browsing of data by specific protein fold. This heirarchy has been adopted from that used at SCOP. Where a fold is contained in BindingDB , a link goes to binding data for the proteins associated with that fold.
Please be patient as the menu may take 10-30 seconds to load.
May 2016. We have added a new Webservice, getLigandsByUniprots, which accepts list of UniProt IDs and returns all ligands for the proteins in the list that bind better than a user-specified threshold. A switch allows selection of results for all ligands, only ligands identified as commercially available, or only ligands identified as FDA-approved drugs. Another switch allows the default XML format to be replaced by JSON.
May 2016. BindingDB is collaborating with the NDEx project to support annotation of biomolecular networks with small molecule binding data. This page provides further details, and you can view BindingDB as NDEx networks here. The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate and publish biological network knowledge.
March 2016. BindingDB's Advanced Search now allows you to download your search results in Excel format.
December 2015. We are delighted to announce that Elsevier's Science Direct journals now include links from articles to BindingDB datasets, where available! For an example, go to this article, and see the "Data for this Article, BindingDB" link on the right.