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Compile Data Set for Download or QSAR

Found 13 hits of kd data for polymerid = 3977,50006455   
Target/Host
(Institution)
LigandTarget/Host
Links
Ligand
Links
Trg + Lig
Links
Ki
nM
ΔG°
kJ/mole
IC50
nM
Kd
nM
EC50/IC50
nM
koff
s-1
kon
M-1s-1
pHTemp
°C
2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF)


(Escherichia coli (strain K12))
BDBM31916
PNG
(Tryptophanhydroxamate, 13)
Show SMILES N[C@@H](Cc1c[nH]c2ccccc12)C(=O)NO
Show InChI InChI=1S/C11H13N3O2/c12-9(11(15)14-16)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13,16H,5,12H2,(H,14,15)/t9-/m0/s1
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PubMed
n/an/an/a 1.92E+3n/an/an/a7.010



University of Dundee



Assay Description
An SPR assay was used to determine the binding affinities of compounds. Experiments were performed on a Biacore 3000 (Biacore, Uppsala, Sweden) instr...


J Med Chem 52: 2531-42 (2009)


Article DOI: 10.1021/jm801475n
BindingDB Entry DOI: 10.7270/Q23B5XGB
More data for this
Ligand-Target Pair
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


(Burkholderia pseudomallei (strain K96243))
BDBM50443770
PNG
(CHEMBL3094104)
Show SMILES Nc1ccn([C@@H]2O[C@H](CNC(=O)c3cn4ccsc4n3)[C@@H](O)[C@H]2O)c(=O)n1
Show InChI InChI=1S/C15H16N6O5S/c16-9-1-2-21(14(25)19-9)13-11(23)10(22)8(26-13)5-17-12(24)7-6-20-3-4-27-15(20)18-7/h1-4,6,8,10-11,13,22-23H,5H2,(H,17,24)(H2,16,19,25)/t8-,10-,11-,13-/m1/s1
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n/an/an/a 7.00E+4n/an/an/an/an/a



Northern Illinois University

Curated by ChEMBL


Assay Description
Binding affinity to Burkolderia pseudomallei IspF by surface plasmon resonance method


Bioorg Med Chem Lett 23: 6860-3 (2013)


Article DOI: 10.1016/j.bmcl.2013.09.101
BindingDB Entry DOI: 10.7270/Q2NC62NX
More data for this
Ligand-Target Pair
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


(Burkholderia pseudomallei (strain K96243))
BDBM50194153
PNG
(5'-CDP | CDP | CHEMBL425252 | Cytidine | Cytidine ...)
Show SMILES Nc1ccn([C@@H]2O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]2O)c(=O)n1
Show InChI InChI=1S/C9H15N3O11P2/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
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n/an/an/a 7.50E+4n/an/an/an/an/a



Northern Illinois University

Curated by ChEMBL


Assay Description
Binding affinity to Burkolderia pseudomallei IspF by surface plasmon resonance method


Bioorg Med Chem Lett 23: 6860-3 (2013)


Article DOI: 10.1016/j.bmcl.2013.09.101
BindingDB Entry DOI: 10.7270/Q2NC62NX
More data for this
Ligand-Target Pair
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


(Burkholderia pseudomallei (strain K96243))
BDBM50443774
PNG
(CHEMBL3094106)
Show SMILES Nc1ccn([C@@H]2O[C@H](CNC(=O)c3ccnc4nc[nH]c34)[C@@H](O)[C@H]2O)c(=O)n1
Show InChI InChI=1S/C16H17N7O5/c17-9-2-4-23(16(27)22-9)15-12(25)11(24)8(28-15)5-19-14(26)7-1-3-18-13-10(7)20-6-21-13/h1-4,6,8,11-12,15,24-25H,5H2,(H,19,26)(H2,17,22,27)(H,18,20,21)/t8-,11-,12-,15-/m1/s1
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n/an/an/a 9.00E+4n/an/an/an/an/a



Northern Illinois University

Curated by ChEMBL


Assay Description
Binding affinity to Burkolderia pseudomallei IspF by surface plasmon resonance method


Bioorg Med Chem Lett 23: 6860-3 (2013)


Article DOI: 10.1016/j.bmcl.2013.09.101
BindingDB Entry DOI: 10.7270/Q2NC62NX
More data for this
Ligand-Target Pair
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


(Burkholderia pseudomallei (strain K96243))
BDBM50443773
PNG
(CHEMBL1230528)
Show SMILES OCc1cn2ccsc2n1
Show InChI InChI=1S/C6H6N2OS/c9-4-5-3-8-1-2-10-6(8)7-5/h1-3,9H,4H2
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n/an/an/a 1.35E+5n/an/an/an/an/a



Northern Illinois University

Curated by ChEMBL


Assay Description
Binding affinity to Burkolderia pseudomallei IspF by surface plasmon resonance method


Bioorg Med Chem Lett 23: 6860-3 (2013)


Article DOI: 10.1016/j.bmcl.2013.09.101
BindingDB Entry DOI: 10.7270/Q2NC62NX
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


(Burkholderia pseudomallei (strain K96243))
BDBM50443771
PNG
(CHEMBL3094103)
Show SMILES Nc1ccn([C@@H]2O[C@H](CNC(=O)Cc3cn4ccsc4n3)[C@@H](O)[C@H]2O)c(=O)n1
Show InChI InChI=1S/C16H18N6O5S/c17-10-1-2-22(15(26)20-10)14-13(25)12(24)9(27-14)6-18-11(23)5-8-7-21-3-4-28-16(21)19-8/h1-4,7,9,12-14,24-25H,5-6H2,(H,18,23)(H2,17,20,26)/t9-,12-,13-,14-/m1/s1
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n/an/an/a 1.48E+5n/an/an/an/an/a



Northern Illinois University

Curated by ChEMBL


Assay Description
Binding affinity to Burkolderia pseudomallei IspF by surface plasmon resonance method


Bioorg Med Chem Lett 23: 6860-3 (2013)


Article DOI: 10.1016/j.bmcl.2013.09.101
BindingDB Entry DOI: 10.7270/Q2NC62NX
More data for this
Ligand-Target Pair
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


(Burkholderia pseudomallei (strain K96243))
BDBM50443772
PNG
(CHEMBL1230597)
Show SMILES Nc1ccn([C@@H]2O[C@H](CNC(=O)c3ccncc3)[C@@H](O)[C@H]2O)c(=O)n1
Show InChI InChI=1S/C15H17N5O5/c16-10-3-6-20(15(24)19-10)14-12(22)11(21)9(25-14)7-18-13(23)8-1-4-17-5-2-8/h1-6,9,11-12,14,21-22H,7H2,(H,18,23)(H2,16,19,24)/t9-,11-,12-,14-/m1/s1
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n/an/an/a 1.80E+5n/an/an/an/an/a



Northern Illinois University

Curated by ChEMBL


Assay Description
Binding affinity to Burkolderia pseudomallei IspF by surface plasmon resonance method


Bioorg Med Chem Lett 23: 6860-3 (2013)


Article DOI: 10.1016/j.bmcl.2013.09.101
BindingDB Entry DOI: 10.7270/Q2NC62NX
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


(Burkholderia pseudomallei (strain K96243))
BDBM50443775
PNG
(CHEMBL3094105)
Show SMILES Nc1ccn([C@@H]2O[C@H](CNC(=O)c3cscn3)[C@@H](O)[C@H]2O)c(=O)n1
Show InChI InChI=1S/C13H15N5O5S/c14-8-1-2-18(13(22)17-8)12-10(20)9(19)7(23-12)3-15-11(21)6-4-24-5-16-6/h1-2,4-5,7,9-10,12,19-20H,3H2,(H,15,21)(H2,14,17,22)/t7-,9-,10-,12-/m1/s1
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n/an/an/a 2.00E+5n/an/an/an/an/a



Northern Illinois University

Curated by ChEMBL


Assay Description
Binding affinity to Burkolderia pseudomallei IspF by surface plasmon resonance method


Bioorg Med Chem Lett 23: 6860-3 (2013)


Article DOI: 10.1016/j.bmcl.2013.09.101
BindingDB Entry DOI: 10.7270/Q2NC62NX
More data for this
Ligand-Target Pair
2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF)


(Escherichia coli (strain K12))
BDBM31910
PNG
(Cyclic CMP, 7)
Show SMILES Nc1ccn([C@@H]2O[C@@H]3COP(O)(=O)O[C@H]3[C@H]2O)c(=O)n1
Show InChI InChI=1S/C9H12N3O7P/c10-5-1-2-12(9(14)11-5)8-6(13)7-4(18-8)3-17-20(15,16)19-7/h1-2,4,6-8,13H,3H2,(H,15,16)(H2,10,11,14)/t4-,6-,7-,8-/m1/s1
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n/an/an/a 9.00E+5n/an/an/a7.010



University of Dundee



Assay Description
An SPR assay was used to determine the binding affinities of compounds. Experiments were performed on a Biacore 3000 (Biacore, Uppsala, Sweden) instr...


J Med Chem 52: 2531-42 (2009)


Article DOI: 10.1021/jm801475n
BindingDB Entry DOI: 10.7270/Q23B5XGB
More data for this
Ligand-Target Pair
3D
3D Structure (docked)
2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF)


(Escherichia coli (strain K12))
BDBM31914
PNG
(4-amino-1-[(2R,3R,4S,5R)-3, 4-dihydroxy-5-(hydroxy...)
Show SMILES Nc1nc(=O)n(cc1F)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O
Show InChI InChI=1S/C9H12FN3O5/c10-3-1-13(9(17)12-7(3)11)8-6(16)5(15)4(2-14)18-8/h1,4-6,8,14-16H,2H2,(H2,11,12,17)/t4-,5-,6-,8-/m1/s1
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n/an/an/a 2.02E+6n/an/an/a7.010



University of Dundee



Assay Description
An SPR assay was used to determine the binding affinities of compounds. Experiments were performed on a Biacore 3000 (Biacore, Uppsala, Sweden) instr...


J Med Chem 52: 2531-42 (2009)


Article DOI: 10.1021/jm801475n
BindingDB Entry DOI: 10.7270/Q23B5XGB
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF)


(Escherichia coli (strain K12))
BDBM31913
PNG
(1-beta-D-arabinofuranosylcytosine 5-monophosphate ...)
Show SMILES Nc1ccn([C@@H]2O[C@H](COP(O)(O)=O)[C@@H](O)[C@@H]2O)c(=O)n1
Show InChI InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7+,8-/m1/s1
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n/an/an/a 1.89E+7n/an/an/a7.010



University of Dundee



Assay Description
An SPR assay was used to determine the binding affinities of compounds. Experiments were performed on a Biacore 3000 (Biacore, Uppsala, Sweden) instr...


J Med Chem 52: 2531-42 (2009)


Article DOI: 10.1021/jm801475n
BindingDB Entry DOI: 10.7270/Q23B5XGB
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF)


(Escherichia coli (strain K12))
BDBM31909
PNG
(Cytidine 2,3-cyclic phosphate, 6)
Show SMILES Nc1ccn([C@H]2O[C@@H](CO)[C@H]3OP(O)(=O)O[C@@H]23)c(=O)n1
Show InChI InChI=1S/C9H12N3O7P/c10-5-1-2-12(9(14)11-5)8-7-6(4(3-13)17-8)18-20(15,16)19-7/h1-2,4,6-8,13H,3H2,(H,15,16)(H2,10,11,14)/t4-,6+,7+,8-/m0/s1
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n/an/an/a 2.05E+7n/an/an/a7.010



University of Dundee



Assay Description
An SPR assay was used to determine the binding affinities of compounds. Experiments were performed on a Biacore 3000 (Biacore, Uppsala, Sweden) instr...


J Med Chem 52: 2531-42 (2009)


Article DOI: 10.1021/jm801475n
BindingDB Entry DOI: 10.7270/Q23B5XGB
More data for this
Ligand-Target Pair
3D
3D Structure (docked)
2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase (IspF)


(Escherichia coli (strain K12))
BDBM31915
PNG
(CDV | Cidofovir | HPMPC | US10071110, Compound Cid...)
Show SMILES Nc1ccn(C[C@@H](CO)OCP(O)(O)=O)c(=O)n1
Show InChI InChI=1S/C8H14N3O6P/c9-7-1-2-11(8(13)10-7)3-6(4-12)17-5-18(14,15)16/h1-2,6,12H,3-5H2,(H2,9,10,13)(H2,14,15,16)/t6-/m0/s1
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n/an/an/a 4.00E+7n/an/an/a7.010



University of Dundee



Assay Description
An SPR assay was used to determine the binding affinities of compounds. Experiments were performed on a Biacore 3000 (Biacore, Uppsala, Sweden) instr...


J Med Chem 52: 2531-42 (2009)


Article DOI: 10.1021/jm801475n
BindingDB Entry DOI: 10.7270/Q23B5XGB
More data for this
Ligand-Target Pair