Target
Histone deacetylase 6 [440-798,S531A]
Ligand
BDBM198125
Substrate
n/a
Meas. Tech.
HDAC6 fluorescence anisotropy assay
Temperature
298.15±n/a K
Kd
170±40 nM
Comments
extracted
Citation
 Hai, YUniversity of Pennsylvania,, DW Histone deacetylase 6 structure and molecular basis of catalysis and inhibition Nat Chem Biol 12:741-747 (2016) [PubMed]  Article 
Target
Name:
Histone deacetylase 6 [440-798,S531A]
Synonyms:
Catalytic domain 2 S531A (zCD2 S531A) | zCD2 S531A
Type:
n/a
Mol. Mass.:
39834.25
Organism:
Danio rerio
Description:
F8W4B7[440-798,S531A]
Residue:
359
Sequence:
SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNAIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR
  
Inhibitor
Name:
BDBM198125
Synonyms:
fl-SAHA
Type:
Small organic molecule
Emp. Form.:
C28H26N2O8
Mol. Mass.:
518.5146
SMILES:
ONC(=O)CCCCCCC(=O)Nc1ccc(c(c1)C(O)=O)-c1c2ccc(O)cc2oc2cc(=O)ccc12 |(29.64,-15.16,;28.31,-15.93,;26.97,-15.16,;26.97,-13.62,;25.64,-15.93,;24.31,-15.16,;22.97,-15.93,;21.64,-15.16,;20.31,-15.93,;18.97,-15.16,;17.64,-15.93,;17.64,-17.47,;16.3,-15.16,;14.97,-15.93,;13.64,-15.16,;12.3,-15.93,;12.3,-17.47,;13.64,-18.24,;14.97,-17.47,;14.41,-19.57,;15.95,-19.57,;13.64,-20.9,;10.97,-18.24,;9.64,-17.47,;9.64,-15.93,;8.3,-15.16,;6.97,-15.93,;5.48,-15.53,;6.97,-17.47,;8.3,-18.24,;8.3,-19.78,;9.64,-20.55,;9.64,-22.09,;10.97,-22.86,;10.97,-24.4,;12.3,-22.09,;12.3,-20.55,;10.97,-19.78,)|
Structure:
Search PDB for entries with ligand similarity: