3EZ5: Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form)

PDB ID: 3EZ5Download
MMDB ID: 77958
PDB Deposition Date: 2008/10/22
Updated in MMDB: 2009/11
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
unidentified▼
Similar Structures:
Biological Unit for 3EZ5: trimeric; determined by author and by software (PISA)
Molecular Components in 3EZ5
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*dcp*dcp*dtp*dgp*dap*dcp*dtp*dcp*dg)-3'
Molecule annotation
1
5'-d(*dap*dtp*dtp*dcp*dgp*dap*dgp*dtp*dcp*dap*dgp*dg)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
2
alpha-D-glucopyranosealpha-D-glucopyranose
2
2
beta-D-fructofuranosebeta-D-fructofuranose
3
2
SULFATE IONSULFATE ION
4
2
ZINC IONZINC ION
5
1
2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303