NCBI
National Center for
Biotechnology Information
Search
2O5Y:
Crystal structure of the 1E9 LeuH47Trp/ArgH100Trp Fab progesterone complex
Citation is unavailable
PDB ID:
2O5Y
Download
MMDB ID:
61329
PDB Deposition Date:
2006/12/6
Updated in MMDB:
2023/12
Experimental Method:
x-ray diffraction
Resolution:
2.85 Å
Source Organism:
synthetic construct
Similar Structures:
VAST+
Download sequence data
Default Biological Unit
All Biological Units (3)
Asymmetric Unit
Biological Unit for 2O5Y: dimeric; determined by author and by software (PISA,PQS)
Molecular Graphic
?
3D view
full-featured 3D viewer
Download Cn3D
Interactions
?
L
L: chimeric antibody Fab 1E9-DB3
H
H: chimeric antibody Fab 1E9-DB3
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
1
SO4: SULFATE ION
2
STR: PROGESTERONE
Drag symbols to move
Double click symbols to explore molecules
Show chemicals
Protein
Nucleotide
Chemical
Download Stucture Data
?
Download
Format:
ASN.1 (Cn3D)
PDB
XML
JSON
PNG (image)
Data Set:
alpha-Carbons
Single 3D structure
* Mouse right-click to bring up context menu
Molecular Components in 2O5Y
Label
Count
Molecule
Proteins (2 molecules)
L
1
Chimeric Antibody FAB 1e9-db3
1 Protein
SS Diagram
3D Domains
1
50
100
150
200
219
219 residues, click to see VAST similar structures.
helix 126-133
strand 2-7
strand 9-14
strand 15-27
strand 37-44
strand 49-55
strand 57-60
strand 66-73
strand 74-84
strand 88-96
strand 101-104
strand 106-112
strand 116-125
strand 134-145
strand 149-156
strand 163-170
strand 178-187
strand 195-203
strand 209-216
Domain 1 (1-114): click to see VAST similar structures
1
Domain 2 (115-219): click to see VAST similar structures
2
click domain graphic to toggle highlight of corresponding residues in 3D viewer
H
1
Chimeric Antibody FAB 1e9-db3
1 Protein
SS Diagram
3D Domains
1
50
100
150
200
227
227 residues, click to see VAST similar structures.
strand 2-7
strand 8-14
strand 16-26
strand 32-40
strand 45-53
strand 56-61
strand 67-74
strand 77-85
strand 91-102
strand 103-108
strand 112-119
strand 123-131
strand 141-152
strand 156-161
strand 168-172
strand 174-178
strand 180-191
strand 200-208
strand 209-217
Domain 1 (1-121): click to see VAST similar structures
1
Domain 2 (122-227): click to see VAST similar structures
2
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Chemicals and Non-standard biopolymers (14 molecules)
1
13
SULFATE ION
2
1
PROGESTERONE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
You are here:
NCBI
>
Computational Biology Branch
>
Structure Group
> MMDB
Write to the Help Desk
HHS Vulnerability Disclosure