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2YFJ:
Crystal structure of Biphenyl dioxygenase variant RR41 with dibenzofuran
PDB ID:
2YFJ
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MMDB ID:
91155
PDB Deposition Date:
2011/4/6
Updated in MMDB:
2023/12
Experimental Method:
x-ray diffraction
Resolution:
2.15 Å
Source Organism:
Paraburkholderia xenovorans LB400
Similar Structures:
VAST+
Download sequence data
Biological Unit for 2YFJ: hexameric; determined by author and by software (PISA)
Molecular Components in 2YFJ
Label
Count
Molecule
Proteins (6 molecules)
A
C
E
3
Biphenyl Dioxygenase Subunit Alpha
(Gene symbol:
BXE_RS42315
)
B
D
F
3
Biphenyl Dioxygenase Subunit Beta
(Gene symbol:
BXE_RS42310
)
Chemicals and Non-standard biopolymers (9 molecules)
1
3
FE2/S2 (INORGANIC) CLUSTER
2
3
FE (II) ION
3
3
DIBENZOFURAN
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303