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BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. As of February 7, 2021, BindingDB contains 41,328 Entries, each with a DOI, containing 2,114,159 binding data for 8,202 protein targets and 928,022 small molecules.
There are 2823 protein-ligand crystal structures with BindingDB affinity measurements for proteins with 100% sequence identity, and 8263 crystal structures allowing proteins to 85% sequence identity.
You can also use BindingDB data through the Registry of Open Data on AWS: https://registry.opendata.aws/binding-db.
| Simple Search Article Titles, Authors, Assays, Compound Names, Target Names |
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| Advanced Search | Combine multiple search criteria, such as chemical structures, target names, and numerical affinities; restrict searches by data source, such as BindingDB, ChEMBL, PubChem, and Patents. |
| Messages |
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| Patent Curation by BindingDB |
BindingDB curates US Patents. We have scanned patents back to 2013 for suitable data and are currently up to date as of mid-2020. However, we cannot be sure of capturing all relevant patents, so if you know of a useful one we have missed, please let us know and we will try to curate it. As of February 7, 2021, BindingDB's patent dataset comprises:
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| Journal Curation by BindingDB |
BindingDB continually curates a set of journals not covered by other public databases. As of February 7, 2021, the status of our current curation effort is as follows:
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| myBDB | |
| Video Tutorials | |
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